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Cell Migration and Chemotaxis


Fully automated cell tracking in phase contrast, brightfield, and fluorescence.







From raw images to final results in minutes



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Features and Benefits



Track thousands of cells - dramatically increase statistical signifigance.

Save many hours of manual tracking time per image sequence.

Increase accuracy and repeatability over human tracking.

Fully compatible with the ibidi Chemotaxis and Migration Tool.




Biological Relevance

The spontaneous or innate movement of cells as well as the migration induced by certain signal substances (chemokinesis) plays a pivotal role in several physiological, but also in pathological processes. Chemotaxis is a special form of chemokinesis, where cells sense a gradient of a signal substance and move towards it:

  • embryonic stem cells in ontogenesis and adult stem cells in tissue regeneration
  • fibroblasts in wound healing
  • leukocytes in immune defense and inflammation
  • tumor cell migration in invasion and metastasis formation
  • sperm motility in fertilization
  • yeast, protozoan, algae and plankton movement in their respective environment, and also as human pathogens with regard to yeast and protozoans.





More benefits when using the ibidi chemotaxis chambers

  • Real-time chemotaxis measurement in a 2D or 3D environment
  • Stable chemotactic gradients for long-term experiments
  • Reproducible results with reliable and user-independent data
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๐Ÿค MetaVi Labs Chemotaxis Analysis โ€” in Alignment with ibidi Standards

MetaVi Labs has developed its chemotaxis analysis platform in close cooperation with ibidi, ensuring that our outputs are fully compatible with the gold-standard methodologies championed by Roman Zantl and the ibidi team. This collaboration means that researchers using MetaVi Labs' software can seamlessly compare, publish, and validate results alongside ibidi's widely adopted ยต-Slide Chemotaxis assays and analysis framework.

๐Ÿ“Š Shared Core Metrics
  • Forward Migration Index (FMI):

    Both MetaVi and ibidi report FMI as a primary indicator of directional migration. MetaVi computes FMIx and FMIy (aligned with gradient axes), directly paralleling ibidi's FMIโ€– and FMIโŠฅ. This allows results to be exchanged and compared without conversion.

  • Center of Mass (CoM):

    MetaVi reports CoMx, CoMy, and magnitude of CoM displacement, fully aligned with ibidi's use of the mean endpoint (M_end) as a measure of population-level bias.

  • Directness (Directionality):

    MetaVi calculates the ratio of Euclidean distance to accumulated path length, exactly as ibidi does. This provides a consistent measure of track straightness.

  • Speed vs Velocity:

    Both systems distinguish cell speed (path-based) from cell velocity (net displacement over time). This prevents confusion between rapid random motility and true chemotaxis.

  • Statistical Validation (Rayleigh Test):

    MetaVi incorporates the Rayleigh test for endpoint uniformity, the same statistical standard recommended by ibidi, ensuring that directional bias is rigorously confirmed.

๐Ÿš€ MetaVi's Extensions

While remaining 100% compatible with ibidi's framework, MetaVi extends the analysis with additional, complementary metrics:

  • Mean Square Displacement (MSD):

    A diffusion-style metric that provides insights into population motility patterns over time.

  • Flexible Track Filtering:

    User-defined thresholds for track duration and displacement, consistent with ibidi's best practices but adjustable for diverse experimental setups.

  • Device-agnostic Workflow:

    Although optimized for ibidi's ยต-Slide Chemotaxis chambers, MetaVi software can ingest tracks from virtually any migration assay, making it useful across platforms.

๐ŸŽฏ Why This Matters

By aligning our analysis platform with ibidi's metrics and methods, MetaVi Labs ensures:

Direct Comparability

Results can be directly cross-validated with ibidi's Chemotaxis & Migration Tool outputs.

Scientific Acceptance

Metrics like FMI, CoM, and Rayleigh test are already recognized in top journals and form the common language of chemotaxis research.

Extended Capability

Researchers gain additional insights (e.g. MSD) without sacrificing compatibility.

๐Ÿ“ In Summary

MetaVi Labs' chemotaxis analysis was built in cooperation with ibidi, making it fully interoperable with ibidi's well-established standards. Researchers can trust that their results will be recognized, reproducible, and directly comparable to the global body of ibidi-based chemotaxis work โ€” with the added power of MetaVi's automation, extended metrics, and device flexibility.






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